[ITA] hdf5-1.6.7-1

[ITA] hdf5-1.6.7-1

[Marco Atzeri]

Dear all,
I would like to adopt HDF5

Hdf5 is one of the package need to compile octave
it is also present in debian

hdf5/setup.hint
----------------------------------------
category: Archive Utils
requires: cygwin zlib
sdesc: "HDF5 Hierarchical Data Format "
ldesc: "HDF5 is a completely new Hierarchical Data
Format product consisting of a data format
specification and a supporting library implementation"

libhdf5-devel/setup.hint
-----------------------------------------
category: Archive Utils
requires: cygwin zlib hdf5
external-source: hfd5
sdesc: "HDF5 Hierarchical Data Format (development
libraries) "
ldesc: "HDF5 is a completely new Hierarchical Data
Format product consisting of a data format
specification and a supporting library implementation"

To download

wget -r -np
http://matzeri.altervista.org/cygwin/hdf5/index.html

http://matzeri.altervista.org/cygwin/hdf5/setup.hint
http://matzeri.altervista.org/cygwin/hdf5/hdf5-1.6.7-1-src.tar.bz2
http://matzeri.altervista.org/cygwin/hdf5/hdf5-1.6.7-1.tar.bz2
http://matzeri.altervista.org/cygwin/hdf5/libhdf5-devel/libhdf5-devel-1.6.7-1.tar.bz2
http://matzeri.altervista.org/cygwin/hdf5/libhdf5-devel/setup.hint




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Re: [ITA] hdf5-1.6.7-1

[Dr. Volker Zell]

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>>>>> Marco Atzeri writes:

    > Dear all,
    > I would like to adopt HDF5

With the attached patch hdf5 is build with shared libs. Also attached
the modified .cygport file to support splitting in main, lib and devel
packages and cygwin specific patch which corrects some setup.hint errors.

Ciao
  Volker


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diff -urN -x CYGWIN-PATCHES -x 'aclocal.m4*' -x autom4te.cache -x config.cache -x config.log -x config.status -x config.h -x config.h.in -x ABOUT-NLS -x Makefile.in.in -x Makevars.template -x '*SlackBuild*' -x '*.egg-info' -x '*.class' -x '*.pyc' -x '*.mo' -x '*.gmo' -x at-3.1.8-31.install.orig -x hdf5-1.6.7-1.src.patch.orig -x libmad-0.15.1b-1.sh.orig -x libmcrypt-2.5.8-1.src.patch.orig -x postgresql-8.1.4-1.cygport.orig -x rcs-5.7-4.src.patch.orig -x template-package.sh.orig -x '*.rej' -x '*.spec' -x '*.temp' -x '*~' -x '*.stackdump' -x COPYING -x INSTALL -x compile -x config-ml.in -x config.guess -x config.sub -x depcomp -x elisp-comp -x install-sh -x ltmain.sh -x mdate-sh -x missing -x mkinstalldirs -x py-compile -x symlink-tree -x texinfo.tex -x ylwrap -x config.rpath -x configure -x omf.make -x xmldocs.make -x gnome-doc-utils.make -x gnome-doc-utils.m4 -x intltool.m4 -x intltool-extract -x intltool-extract.in -x intltool-merge -x intltool-merge.in -x intltool-update -x intltool-update.in -x Makefile origsrc/hdf5-1.6.7/config/commence.in src/hdf5-1.6.7/config/commence.in
--- origsrc/hdf5-1.6.7/config/commence.in	2008-02-01 04:04:06.000000000 +0100
+++ src/hdf5-1.6.7/config/commence.in	2008-04-27 13:03:42.718750000 +0200
@@ -67,7 +67,7 @@
 DYNAMIC_DIRS=@DYNAMIC_DIRS@
 LT=$(top_builddir)/libtool
 LT_COMPILE=$(LT) --mode=compile $(CC)
-LT_LINK_LIB=$(LT) --mode=link $(CC) -rpath $(libdir) $(DYNAMIC_DIRS)
+LT_LINK_LIB=$(LT) --mode=link $(CC) -shared -no-undefined -rpath $(libdir) $(DYNAMIC_DIRS)
 LT_LINK_EXE=$(LT) --mode=link $(CC) $(LT_STATIC_EXEC) -dlopen self -rpath $(libdir) $(DYNAMIC_DIRS)
 LT_RUN=$(LT) --mode=execute
 LT_INSTALL_PROG=$(LT) --mode=install $(INSTALL_PROGRAM)
diff -urN -x CYGWIN-PATCHES -x 'aclocal.m4*' -x autom4te.cache -x config.cache -x config.log -x config.status -x config.h -x config.h.in -x ABOUT-NLS -x Makefile.in.in -x Makevars.template -x '*SlackBuild*' -x '*.egg-info' -x '*.class' -x '*.pyc' -x '*.mo' -x '*.gmo' -x at-3.1.8-31.install.orig -x hdf5-1.6.7-1.src.patch.orig -x libmad-0.15.1b-1.sh.orig -x libmcrypt-2.5.8-1.src.patch.orig -x postgresql-8.1.4-1.cygport.orig -x rcs-5.7-4.src.patch.orig -x template-package.sh.orig -x '*.rej' -x '*.spec' -x '*.temp' -x '*~' -x '*.stackdump' -x COPYING -x INSTALL -x compile -x config-ml.in -x config.guess -x config.sub -x depcomp -x elisp-comp -x install-sh -x ltmain.sh -x mdate-sh -x missing -x mkinstalldirs -x py-compile -x symlink-tree -x texinfo.tex -x ylwrap -x config.rpath -x configure -x omf.make -x xmldocs.make -x gnome-doc-utils.make -x gnome-doc-utils.m4 -x intltool.m4 -x intltool-extract -x intltool-extract.in -x intltool-merge -x intltool-merge.in -x intltool-update -x intltool-update.in -x Makefile origsrc/hdf5-1.6.7/config/conclude.in src/hdf5-1.6.7/config/conclude.in
--- origsrc/hdf5-1.6.7/config/conclude.in	2008-02-01 04:04:06.000000000 +0100
+++ src/hdf5-1.6.7/config/conclude.in	2008-04-27 13:03:42.734375000 +0200
@@ -23,7 +23,7 @@
 ##
 lib: $(LIB)
 $(LIB) __no_library__: $(LIB_OBJ)
-	@$(LT_LINK_LIB) -o $@ $(CFLAGS) $(LIB_OBJ) $(LDFLAGS) $(LIBS)
+	@$(LT_LINK_LIB) -o $@ $(CFLAGS) $(LIB_OBJ) $(LIBHDF5) $(LDFLAGS) $(LIBS)
 	@for d in X $(SUBDIRS); do                                      \
 	    if test $$d != X; then                                      \
 	        (set -x; cd $$d && $(MAKE) lib) || exit 1;              \
diff -urN -x CYGWIN-PATCHES -x 'aclocal.m4*' -x autom4te.cache -x config.cache -x config.log -x config.status -x config.h -x config.h.in -x ABOUT-NLS -x Makefile.in.in -x Makevars.template -x '*SlackBuild*' -x '*.egg-info' -x '*.class' -x '*.pyc' -x '*.mo' -x '*.gmo' -x at-3.1.8-31.install.orig -x hdf5-1.6.7-1.src.patch.orig -x libmad-0.15.1b-1.sh.orig -x libmcrypt-2.5.8-1.src.patch.orig -x postgresql-8.1.4-1.cygport.orig -x rcs-5.7-4.src.patch.orig -x template-package.sh.orig -x '*.rej' -x '*.spec' -x '*.temp' -x '*~' -x '*.stackdump' -x COPYING -x INSTALL -x compile -x config-ml.in -x config.guess -x config.sub -x depcomp -x elisp-comp -x install-sh -x ltmain.sh -x mdate-sh -x missing -x mkinstalldirs -x py-compile -x symlink-tree -x texinfo.tex -x ylwrap -x config.rpath -x configure -x omf.make -x xmldocs.make -x gnome-doc-utils.make -x gnome-doc-utils.m4 -x intltool.m4 -x intltool-extract -x intltool-extract.in -x intltool-merge -x intltool-merge.in -x intltool-update -x intltool-update.in -x Makefile origsrc/hdf5-1.6.7/test/Makefile.in src/hdf5-1.6.7/test/Makefile.in
--- origsrc/hdf5-1.6.7/test/Makefile.in	2008-02-01 04:03:46.000000000 +0100
+++ src/hdf5-1.6.7/test/Makefile.in	2008-04-27 13:03:42.734375000 +0200
@@ -41,6 +41,7 @@
 LIB_SRC=h5test.c testframe.c
 LIB_OBJ=$(LIB_SRC:.c=.lo)
 PUB_LIB=
+LIBS=$(LIBHDF5)
 
 ## Temporary files.  These files are the ones created by setting the
 ## HDF5_NOCLEANUP environment variable and running `make test' without

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diff -urN origsrc/hdf5-1.6.7/CYGWIN-PATCHES/README src/hdf5-1.6.7/CYGWIN-PATCHES/README
--- origsrc/hdf5-1.6.7/CYGWIN-PATCHES/README	1970-01-01 01:00:00.000000000 +0100
+++ src/hdf5-1.6.7/CYGWIN-PATCHES/README	2008-04-27 13:40:12.203125000 +0200
@@ -0,0 +1,54 @@
+HDF5
+-----------------------------------------------
+HDF5 is a unique technology suite that makes possible the 
+management of extremely large and complex data collections.
+
+The HDF5 technology suite includes:
+
+    * A versatile data model that can represent very complex 
+	data objects and a wide variety of metadata.
+
+    * A completely portable file format with no limit on the 
+	number or size of data objects in the collection.
+
+    * A software library that runs on a range of computational 
+	platforms, from laptops to massively parallel systems, 
+	and implements a high-level API with C, C++, Fortran 90, 
+	and Java interfaces.
+
+    * A rich set of integrated performance features that allow for 
+	access time and storage space optimizations.
+
+    * Tools and applications for managing, manipulating, viewing, 
+	and analyzing the data in the collection.
+---------------------------------------------------
+
+License:
+   	The HDF5 data model, file format, API, library, and tools
+	are open and distributed without charge.
+
+Runtime requirements:
+	cygwin-1.5.25 or newer
+	zlib-1.2.3-2 or newer 
+
+Build requirements:
+  cygwin
+  zlib
+  gcc-3.3.3  or newer
+  binutils-20030901-1 or newer
+  autoconf, binutils, gcc,
+  g++, make, less, readline, diff, patch
+	
+Canonical homepage:
+  http://www.hdfgroup.org/HDF5/
+
+Canonical download:
+  ftp://ftp.hdfgroup.org/HDF5/current16/ 
+
+--------- hdf5-1.6.7-1 -------------------
+Initial Cygwin Package
+------------------------------------
+Cygwin port maintained by: Marco Atzeri
+
+Please address all questions to the Cygwin mailing list at cygwin@cygwin.com
+
diff -urN origsrc/hdf5-1.6.7/CYGWIN-PATCHES/devel.hint src/hdf5-1.6.7/CYGWIN-PATCHES/devel.hint
--- origsrc/hdf5-1.6.7/CYGWIN-PATCHES/devel.hint	1970-01-01 01:00:00.000000000 +0100
+++ src/hdf5-1.6.7/CYGWIN-PATCHES/devel.hint	2008-04-27 13:46:34.125000000 +0200
@@ -0,0 +1,5 @@
+category: Devel Archive Utils
+requires: cygwin libhdf5_0 zlib
+external-source: hdf5
+sdesc: "HDF5 Hierarchical Data Format - (development)"
+ldesc: "HDF5 is a completely new Hierarchical Data Format product consisting of a data format specification and a supporting library implementation"
diff -urN origsrc/hdf5-1.6.7/CYGWIN-PATCHES/lib.hint src/hdf5-1.6.7/CYGWIN-PATCHES/lib.hint
--- origsrc/hdf5-1.6.7/CYGWIN-PATCHES/lib.hint	1970-01-01 01:00:00.000000000 +0100
+++ src/hdf5-1.6.7/CYGWIN-PATCHES/lib.hint	2008-04-27 13:45:16.375000000 +0200
@@ -0,0 +1,5 @@
+category: Devel Libs Archive Utils
+requires: cygwin zlib
+external-source: hdf5
+sdesc: "HDF5 Hierarchical Data Format - (runtime)"
+ldesc: "HDF5 is a completely new Hierarchical Data Format product consisting of a data format specification and a supporting library implementation"
diff -urN origsrc/hdf5-1.6.7/CYGWIN-PATCHES/setup.hint src/hdf5-1.6.7/CYGWIN-PATCHES/setup.hint
--- origsrc/hdf5-1.6.7/CYGWIN-PATCHES/setup.hint	1970-01-01 01:00:00.000000000 +0100
+++ src/hdf5-1.6.7/CYGWIN-PATCHES/setup.hint	2008-04-27 14:11:33.000000000 +0200
@@ -0,0 +1,4 @@
+category: Archive Utils
+requires: cygwin libhdf5_0 coreutils ed gcc sed
+sdesc: "HDF5 Hierarchical Data Format"
+ldesc: "HDF5 is a completely new Hierarchical Data Format product consisting of a data format specification and a supporting library implementation"

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# $Id: sample.cygport,v 1.5 2006/11/20 05:48:58 yselkowitz Exp $
ORIG_PN="hdf5"

DESCRIPTION="HDF5 API interface"
HOMEPAGE="http://www.hdfgroup.org/HDF5/"
SRC_URI="ftp://ftp.hdfgroup.org/HDF5/current16/src/${PN}-${PV}.tar.gz"

abi=0
PKG_NAMES="${PN} lib${PN}_${abi} lib${PN}-devel"
PKG_HINTS="setup lib devel"
PKG_CONTENTS[0]='--exclude=usr/bin/*.dll usr/bin usr/share/'
PKG_CONTENTS[1]="usr/bin/*-${abi}.dll"
PKG_CONTENTS[2]='usr/include/ usr/lib/'


DIFF_EXCLUDES="Makefile"

CYGCONF_ARGS="
	--with-ssl
	--with-zlib
	--enable-cxx  
"

src_install() {
	cd ${S}
	dodoc COPYING README.txt

	insinto /usr/share/doc/${P}/release_docs
	doins release_docs/*

    	cd ${B}
    	USE_DESTDIR=0
	cyginstall install-all    			\
		prefix=${D} exec-prefix=${D}  	        \
		bindir=${D}/usr/bin			\
		includedir=${D}/usr/include/${PN}	\
		docdir=${D}/usr/share/doc/${P}		\	
		datarootdir=${D}/usr/share
}

Re: [ITA] hdf5-1.6.7-1

[Marco Atzeri]

--- "Dr. Volker Zell" ha scritto:

> >>>>> Marco Atzeri writes:
> 
>     > Dear all,
>     > I would like to adopt HDF5
> 
> With the attached patch hdf5 is build with shared
> libs. Also attached
> the modified .cygport file to support splitting in
> main, lib and devel
> packages and cygwin specific patch which corrects
> some setup.hint errors.
> 
> Ciao
>   Volker

rebuilt as suggested

To download 
wget -r -np
http://matzeri.altervista.org/cygwin/hdf5/index.html

setup.hint
hdf5-1.6.7-1-src.tar.bz2
hdf5-1.6.7-1.tar.bz2
libhdf5-devel/libhdf5-devel-1.6.7-1.tar.bz2
libhdf5-devel/setup.hint
libhdf5_0/libhdf5_0-1.6.7-1.tar.bz2
libhdf5_0/setup.hint

Ciao
Marco



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[GTG] Re: [ITA] hdf5-1.6.7-1

[Dr. Volker Zell]

>>>>> Marco Atzeri writes:

    > rebuilt as suggested

    > To download 
    > wget -r -np
    > http://matzeri.altervista.org/cygwin/hdf5/index.html

    > setup.hint
    > hdf5-1.6.7-1-src.tar.bz2
    > hdf5-1.6.7-1.tar.bz2
    > libhdf5-devel/libhdf5-devel-1.6.7-1.tar.bz2
    > libhdf5-devel/setup.hint
    > libhdf5_0/libhdf5_0-1.6.7-1.tar.bz2
    > libhdf5_0/setup.hint

Builds fine from source, packaging and setup.hint look good.

GTG
  Volker
  

Re: [ITA] hdf5-1.6.7-1

[Corinna Vinschen]

On May 12 14:07, Marco Atzeri wrote:
> To download 
> wget -r -np
> http://matzeri.altervista.org/cygwin/hdf5/index.html

Uploaded.


Thanks,
Corinna

-- 
Corinna Vinschen                  Please, send mails regarding Cygwin to
Cygwin Project Co-Leader          cygwin AT cygwin DOT com
Red Hat