From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from m0.truegem.net (m0.truegem.net [69.55.228.47]) by sourceware.org (Postfix) with ESMTPS id 0DC5B385781B for ; Sat, 3 Apr 2021 02:53:25 +0000 (GMT) DMARC-Filter: OpenDMARC Filter v1.3.2 sourceware.org 0DC5B385781B Authentication-Results: sourceware.org; dmarc=none (p=none dis=none) header.from=maxrnd.com Authentication-Results: sourceware.org; spf=none smtp.mailfrom=mark@maxrnd.com Received: (from daemon@localhost) by m0.truegem.net (8.12.11/8.12.11) id 1332rPLg094445 for ; Fri, 2 Apr 2021 19:53:25 -0700 (PDT) (envelope-from mark@maxrnd.com) Received: from 162-235-43-67.lightspeed.irvnca.sbcglobal.net(162.235.43.67), claiming to be "[192.168.1.100]" via SMTP by m0.truegem.net, id smtpdLCkchU; Fri Apr 2 18:53:20 2021 Subject: Re: Maybe consider rpmalloc To: cygwin-developers@cygwin.com References: <067987e2-e958-b56c-efea-25d827568453@maxrnd.com> From: Mark Geisert Message-ID: <6f68b10b-7fe5-4378-afb9-9001de084edf@maxrnd.com> Date: Fri, 2 Apr 2021 19:53:21 -0700 User-Agent: Mozilla/5.0 (Windows NT 10.0; WOW64; rv:52.0) Gecko/20100101 Firefox/52.0 SeaMonkey/2.49.4 MIME-Version: 1.0 In-Reply-To: Content-Type: text/plain; charset=UTF-8; format=flowed Content-Transfer-Encoding: 7bit X-Spam-Status: No, score=-4.1 required=5.0 tests=BAYES_00, KAM_DMARC_STATUS, KAM_LAZY_DOMAIN_SECURITY, NICE_REPLY_A, SPF_HELO_NONE, SPF_NONE, TXREP autolearn=no autolearn_force=no version=3.4.2 X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on server2.sourceware.org X-BeenThere: cygwin-developers@cygwin.com X-Mailman-Version: 2.1.29 Precedence: list List-Id: Cygwin core component developers mailing list List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 03 Apr 2021 02:53:28 -0000 Hi Teemu, Regarding your test case... >> Here's a test case: >> >> bwa_original mem -t 10 bwa_reference/hs37d5.fa ERS4238880_1.fastq > test.sam >> >> bwa_working mem -t 10 bwa_reference/hs37d5.fa ERS4238880_1.fastq > test.sam >> >> Files: >> >> https://drive.google.com/drive/folders/1waICih51f4mHZEyWY1onyEcKqm0kj3Yt?usp=sharing Could you please put a copy of the file hs37d5.fa into your Google drive folder? If that file can be built with the given fastq file and the bwa program, please show me how to do that. A copy+paste from your terminal session would be preferable over the video captures you've supplied already, if possible. Thank you, ..mark