From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: (qmail 80260 invoked by alias); 25 Jan 2016 10:23:49 -0000 Mailing-List: contact cygwin-help@cygwin.com; run by ezmlm Precedence: bulk List-Id: List-Subscribe: List-Archive: List-Post: List-Help: , Sender: cygwin-owner@cygwin.com Mail-Followup-To: cygwin@cygwin.com Received: (qmail 80228 invoked by uid 89); 25 Jan 2016 10:23:48 -0000 Authentication-Results: sourceware.org; auth=none X-Virus-Found: No X-Spam-SWARE-Status: No, score=-2.6 required=5.0 tests=BAYES_00,FREEMAIL_FROM,RCVD_IN_DNSWL_LOW,SPF_PASS autolearn=ham version=3.3.2 spammy=rdynamic, expl, personal X-HELO: mail-wm0-f48.google.com Received: from mail-wm0-f48.google.com (HELO mail-wm0-f48.google.com) (74.125.82.48) by sourceware.org (qpsmtpd/0.93/v0.84-503-g423c35a) with (AES128-GCM-SHA256 encrypted) ESMTPS; Mon, 25 Jan 2016 10:23:47 +0000 Received: by mail-wm0-f48.google.com with SMTP id l65so57636994wmf.1 for ; Mon, 25 Jan 2016 02:23:46 -0800 (PST) X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20130820; h=x-gm-message-state:subject:to:references:from:message-id:date :user-agent:mime-version:in-reply-to:content-type :content-transfer-encoding; bh=A3nfMYhOKxHJ9UYpuH7Un5PwfaZEw1hE0WDsyauJbQI=; b=UtZplzi6yWsCO/LUvwIg2b4fXFrzCH0rsGmt2pFgyxN+doUc2HNC6TRQYpTwuUCqfd jjSMDOB/IY9OyPgybynQ2pOx8pyhn+gqjYpb0XB9s6/JVXvAmxaj60fa/KLnR16qEYLY W3KUzFBJ5bWjmwLn4aJRaPoyKmiOgLUIhFup5buejYtgtzoSvFAxks5lT9fM7gx8DGAe fR9HheM18AZl4VR7WGF0RQREO82db+JPstiYVgVTEuPhLlvu8kC/irQ0FsT+zXKEhzFn 6BhyzS5hOCVssuR4xbQl5TDFbjD1zkKZ8z1+oIENKMaJL0ZPPajuLIW2dv+XIiWSKFc5 y4jQ== X-Gm-Message-State: AG10YOSfcsBAaVClF+4WXnft5Chc+brvy8c1dSaUmVBrf2VuFTeUOLfKAPj46lr8X7rG3A== X-Received: by 10.28.63.22 with SMTP id m22mr16199495wma.59.1453717423755; Mon, 25 Jan 2016 02:23:43 -0800 (PST) Received: from [172.21.188.188] ([149.6.156.42]) by smtp.googlemail.com with ESMTPSA id gl10sm18429243wjb.30.2016.01.25.02.23.40 for (version=TLSv1/SSLv3 cipher=OTHER); Mon, 25 Jan 2016 02:23:41 -0800 (PST) Subject: Re: Updated Cygwin64 with 2.4.1.1 To: cygwin@cygwin.com References: From: Marco Atzeri Message-ID: <56A5F7AA.9010401@gmail.com> Date: Mon, 25 Jan 2016 20:48:00 -0000 User-Agent: Mozilla/5.0 (Windows NT 6.1; WOW64; rv:38.0) Gecko/20100101 Thunderbird/38.5.1 MIME-Version: 1.0 In-Reply-To: Content-Type: text/plain; charset=windows-1252; format=flowed Content-Transfer-Encoding: 7bit X-IsSubscribed: yes X-SW-Source: 2016-01/txt/msg00351.txt.bz2 On 25/01/2016 00:39, Robert May wrote: Hi Robert, The mail subject is not very useful > Instalation error > -/unknown package > x3270.sh exit code 1 this is an issue completely unrelated to the rest of your mail > htslib configure - make - make install ok > > samtools configure ok > > Robert@DESKTOP-14EL82S /usr/local/bin/samtools-1.3 Personal preference: in general "/usr/local/bin" is not the place that I will use as build area. > $ ./configure can you please clarify what is your problem ? I tried to build samtools-1.3 and it has at least two issue for a porting to cygwin: - on Makefile there is a -rdynamic that does not work on cygwin - the package require expl and logl that are not yet available in cygwin Regards Marco -- Problem reports: http://cygwin.com/problems.html FAQ: http://cygwin.com/faq/ Documentation: http://cygwin.com/docs.html Unsubscribe info: http://cygwin.com/ml/#unsubscribe-simple