From: Robert May <tpibob@gmail.com>
To: "cygwin@cygwin.com" <cygwin@cygwin.com>
Subject: Re: tree puzzle error running Configure after installing update 2.4.1.1 to Cygwin64
Date: Wed, 27 Jan 2016 08:52:00 -0000 [thread overview]
Message-ID: <BAY175-W38CA0B8417C1EB8BD551BEADD90@phx.gbl> (raw)
cyg Simple
OK replaced the two files config.guess and config.sub with a 2016 timestamp and ran make again.
like samtools it has a couple of warning for terms like
But it does not get the job done.
the problem area seems to be in this area of make
ppuzzle.c: In function ‘PP_Update_Rates’:
ppuzzle.c:258:38: error: ‘PP_UPDATERATES’ undeclared (first use in this function)
MPI_Send(&dummy, 0, MPI_INT, dest, PP_UPDATERATES, PP_Comm);
two pages later
ppuzzle.c: In function ‘PP_RecvData’:
ppuzzle.c:905:3: warning: ‘MPI_Address’ is deprecated (declared at /usr/include/mpi.h:1183): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0]));
this continues back and forth till we get to the end with
<builtin>: recipe for target 'ppuzzle' failed
make[3]: *** [ppuzzle] Error 1
make[3]: Leaving directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src'
Makefile:532: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src'
Makefile:397: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src'
Makefile:370: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
Robert@DESKTOP-14EL82S /usr/local/bin/tree-puzzle-5.3.rc16-windows
I also ran make check
Robert@DESKTOP-14EL82S /usr/local/bin/tree-puzzle-5.3.rc16-windows
$ make check
Making check in src
make[1]: Entering directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src'
Making check in sprng
make[2]: Entering directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src/sprng'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src/sprng'
make[2]: Entering directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src'
cd sprng && make mlfg.o makeseed.o memory.o checkid.o store.o
make[3]: Entering directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src/sprng'
make[3]: 'mlfg.o' is up to date.
make[3]: 'makeseed.o' is up to date.
make[3]: 'memory.o' is up to date.
make[3]: 'checkid.o' is up to date.
make[3]: 'store.o' is up to date.
make[3]: Leaving directory '/usr/local/bin/tree-puzzle-5.3.rc16-windows/src/sprng'
gcc -g -O2 sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o sprng/mlfg.o sprng/makeseed.o sprng/memory.o sprng/checkid.o sprng/store.o -lm -o puzzle.exe
gcc -g -O2 ppuzzle.c -o ppuzzle
ppuzzle.c: In function ‘PP_Update_Rates’:
ppuzzle.c:258:38: error: ‘PP_UPDATERATES’ undeclared (first use in this function)
MPI_Send(&dummy, 0, MPI_INT, dest, PP_UPDATERATES, PP_Comm);
I can send full make and make check runs if needed
help
Bob
Bob May
DNA Projects I2b L415, I2c L596 HG, Spriggs of Cleve SA Family & Tyler Surname and ISOGG YTree
--
Problem reports: http://cygwin.com/problems.html
FAQ: http://cygwin.com/faq/
Documentation: http://cygwin.com/docs.html
Unsubscribe info: http://cygwin.com/ml/#unsubscribe-simple
next reply other threads:[~2016-01-27 6:45 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-01-27 8:52 Robert May [this message]
2016-01-27 13:30 ` Marco Atzeri
-- strict thread matches above, loose matches on Subject: below --
2016-01-26 13:03 Robert May
2016-01-26 23:33 ` cyg Simple
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=BAY175-W38CA0B8417C1EB8BD551BEADD90@phx.gbl \
--to=tpibob@gmail.com \
--cc=cygwin@cygwin.com \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).