From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from omta002.cacentral1.a.cloudfilter.net (omta002.cacentral1.a.cloudfilter.net [3.97.99.33]) by sourceware.org (Postfix) with ESMTPS id BA2F83858CDB for ; Wed, 13 Sep 2023 02:02:07 +0000 (GMT) DMARC-Filter: OpenDMARC Filter v1.4.2 sourceware.org BA2F83858CDB Authentication-Results: sourceware.org; dmarc=pass (p=none dis=none) header.from=Shaw.ca Authentication-Results: sourceware.org; spf=pass smtp.mailfrom=shaw.ca Received: from shw-obgw-4002a.ext.cloudfilter.net ([10.228.9.250]) by cmsmtp with ESMTP id g8NKqRSxR6NwhgFChqhkSD; Wed, 13 Sep 2023 02:02:07 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=shaw.ca; s=s20180605; t=1694570527; bh=2q8jGWmv2ITBDOQ818uxOmT+HNjdVaW1+4pE6yClLxQ=; h=Date:Reply-To:Subject:To:References:Cc:From:In-Reply-To; b=QcY9b2TLu2Hy7FUwjMKC7noRoNmJTPdI24K+BCb0TTFA0Z7xCTFiZnH4yva7cAPgS 4mwyPioHIhJTpFZ6Gh6hX5nIUcQCBBHUgKDlKZX458EMCY6n4LaxooIoW3JS6Z7o0D 5SQCF2xnlvVWxJSzuHxqNe4181KLFvJyhLMfvRfmjez6fXcyOOvp4FKO7k5SqLFT28 Uj3vwjAQOK1U9MSCVWW/CZI5IK1eaGrGqwci97VrCV7KgTZjMie/bxNFWoRZtBx0q+ 3GgOCGMhfaFZc0WGFGHU6m3H9jaz8VwM9eq7rUOdqLG53HYk165R3KT9N+vP/6Hh6e pZT6ruIJ1mSyA== Received: from [10.0.0.5] ([184.64.102.149]) by cmsmtp with ESMTP id gFCgqztYZyAOegFCgquVS3; Wed, 13 Sep 2023 02:02:07 +0000 X-Authority-Analysis: v=2.4 cv=e5oV9Il/ c=1 sm=1 tr=0 ts=6501181f a=DxHlV3/gbUaP7LOF0QAmaA==:117 a=DxHlV3/gbUaP7LOF0QAmaA==:17 a=IkcTkHD0fZMA:10 a=dXvAoEkxAAAA:8 a=bZAe9ARq7syUIMJJxz4A:9 a=QEXdDO2ut3YA:10 a=louMuWYoCpMA:10 a=iJ39DRKJB4kz2P1Iyp3E:22 Message-ID: Date: Tue, 12 Sep 2023 20:02:06 -0600 MIME-Version: 1.0 User-Agent: Mozilla/5.0 (Windows NT 10.0; Win64; x64; rv:102.0) Gecko/20100101 Thunderbird/102.15.0 Reply-To: cygwin@cygwin.com Subject: Re: Python 3.9 shapely package build failed Content-Language: en-CA To: cygwin@cygwin.com References: Cc: Joel Breazeale From: Brian Inglis Organization: Inglis In-Reply-To: Content-Type: text/plain; charset=UTF-8; format=flowed Content-Transfer-Encoding: 8bit X-CMAE-Envelope: MS4xfD8UXcwV7tQKdegGBVN/s29pOT0qcGvqSmDLDM70MZ46TpfgbQ9mkKHISj/o2pHYGhQTfLx3MJxwk6dWByehDdB/iGOOdJfBZHDJkbNPcmbBEHRcoUke FV016OVDB+Is58GqzWTmcc8Lqi9qscWqgMFrig1c9d+Fp+ISNSTk8vUuVOkmekmelE/PCZ2p8RNmOsOgQ9yhxNmzQ1+NS+qr8wi7iGpETv1aYYO27HX5AR6Y X-Spam-Status: No, score=-4.1 required=5.0 tests=BAYES_00,DKIM_SIGNED,DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,NICE_REPLY_A,RCVD_IN_DNSWL_LOW,SPF_HELO_NONE,SPF_PASS,TXREP autolearn=ham autolearn_force=no version=3.4.6 X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on server2.sourceware.org List-Id: On 2023-09-12 18:58, Joel Breazeale via Cygwin wrote: > The shapely Python 3.9 package is failing to build. Please see the > messages in red and the one in green below: > > > [bin]$ /usr/local/bin/pip3.9 install shapely > Collecting shapely > Using cached shapely-2.0.1.tar.gz (275 kB) > Installing build dependencies ... done > Getting requirements to build wheel ... done > Installing backend dependencies ... done > Preparing metadata (pyproject.toml) ... done > Requirement already satisfied: numpy>=1.14 in > /usr/local/lib/python3.9/site-packages (from shapely) (1.25.2) > Building wheels for collected packages: shapely > Building wheel for shapely (pyproject.toml) ... error > error: *subprocess-exited-with-error* > > > × Building wheel for shapely (pyproject.toml) did not run successfully. > │ exit code: 1 > ╰─> [103 lines of output] > :8: DeprecationWarning: pkg_resources is deprecated as an > API. See https://setuptools.pypa.io/en/latest/pkg_resources.html > Could not find geos-config executable. Either append the path to > geos-config to PATH or manually provide the include_dirs, library_dirs, > libraries and other link args for compiling against a GEOS version >=3.5. > running bdist_wheel > running build > running build_py > creating build > creating build/lib.cygwin-3.4.9-x86_64-cpython-39 > creating build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/affinity.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/constructive.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/coordinates.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/coords.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/creation.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/decorators.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/errors.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/geos.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/io.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/linear.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/measurement.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/ops.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/plotting.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/predicates.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/prepared.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/set_operations.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/speedups.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/strtree.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/testing.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/validation.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/wkb.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/wkt.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/_enum.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/_geometry.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/_ragged_array.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/_version.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/__init__.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > creating build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/algorithms > copying shapely/algorithms/cga.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/algorithms > copying shapely/algorithms/polylabel.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/algorithms > copying shapely/algorithms/__init__.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/algorithms > creating build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > copying shapely/geometry/base.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > copying shapely/geometry/collection.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > copying shapely/geometry/conftest.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > copying shapely/geometry/geo.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > copying shapely/geometry/linestring.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > copying shapely/geometry/multilinestring.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > copying shapely/geometry/multipoint.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > copying shapely/geometry/multipolygon.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > copying shapely/geometry/point.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > copying shapely/geometry/polygon.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > copying shapely/geometry/__init__.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/geometry > creating build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/common.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_constructive.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_coordinates.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_creation.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_creation_indices.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_geometry.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_io.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_linear.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_measurement.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_misc.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_plotting.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_predicates.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_ragged_array.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_set_operations.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_strtree.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/test_testing.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > copying shapely/tests/__init__.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests > creating build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/vectorized > copying shapely/vectorized/__init__.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/vectorized > creating > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_collection.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_coords.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_decimal.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_emptiness.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_format.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_geometry_base.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_hash.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_linestring.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_multi.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_multilinestring.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_multipoint.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_multipolygon.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_point.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/test_polygon.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/tests/geometry/__init__.py -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/tests/geometry > copying shapely/_geos.pxd -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > copying shapely/_pygeos_api.pxd -> > build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely > UPDATING build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/_version.py > set build/lib.cygwin-3.4.9-x86_64-cpython-39/shapely/_version.py to > '2.0.1' > running build_ext > building 'shapely.lib' extension > creating build/temp.cygwin-3.4.9-x86_64-cpython-39 > creating build/temp.cygwin-3.4.9-x86_64-cpython-39/src > gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall > -I/usr/include/python3.9 > -I/tmp/pip-build-env-udfc5yaz/overlay/lib/python3.9/site-packages/numpy/core/include > -c src/c_api.c -o build/temp.cygwin-3.4.9-x86_64-cpython-39/src/c_api.o > In file included from src/c_api.h:22, > from src/c_api.c:15: > src/geos.h:15:10: fatal error: geos_c.h: No such file or directory > 15 | #include > | ^~~~~~~~~~ > compilation terminated. > error: command '/usr/bin/gcc' failed with exit code 1 > [end of output] > > note: This error originates from a subprocess, and is likely not a > problem with pip. > ERROR: Failed building wheel for shapely > Failed to build shapely > ERROR: Could not build wheels for shapely, which is required to install > pyproject.toml-based projects > [bin]$ > > I presume the inability to find geos-config then caused geos_c.h to not be > able to be found. Both are part of the same package. > I have shapely installed and working under Homebrew (Python 3.11.5), Oracle > Linux 9.2 under VirtualBox (Python 3.9.16) and Oracle Linux 8 (Python > 3.11.4), just not under cygwin. > > What do you think is the fix for this issue? $ cygcheck -p geos_c.h Found 3 matches for geos_c.h libgeos-devel-3.10.3-1 - libgeos-devel: Geometry Engine for Topology - (devel) libgeos-devel-3.11.0-1 - libgeos-devel: Geometry Engine for Topology - (devel) libgeos-devel-3.11.1-1 - libgeos-devel: Geometry Engine for Topology - (devel) $ cygcheck -p geos-config Found 3 matches for geos-config libgeos-devel-3.10.3-1 - libgeos-devel: Geometry Engine for Topology - (devel) libgeos-devel-3.11.0-1 - libgeos-devel: Geometry Engine for Topology - (devel) libgeos-devel-3.11.1-1 - libgeos-devel: Geometry Engine for Topology - (devel) Neither is installed, because to build library code you typically need to have installed a [lib]...-devel package, which other packages do not usually depend on. Check the prereqs in python, then check the Cygwin packages that provide packages with that root name, then install them, before trying pip install, which is outside of Cygwin packaging, so you need to do everything yourself! If in doubt, you can just install everything which matches geos or whatever! -- Take care. Thanks, Brian Inglis Calgary, Alberta, Canada La perfection est atteinte Perfection is achieved non pas lorsqu'il n'y a plus rien à ajouter not when there is no more to add mais lorsqu'il n'y a plus rien à retirer but when there is no more to cut -- Antoine de Saint-Exupéry