From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from omta001.cacentral1.a.cloudfilter.net (omta001.cacentral1.a.cloudfilter.net [3.97.99.32]) by sourceware.org (Postfix) with ESMTPS id BEF1338582B2 for ; Fri, 23 Sep 2022 06:17:15 +0000 (GMT) DMARC-Filter: OpenDMARC Filter v1.4.1 sourceware.org BEF1338582B2 Authentication-Results: sourceware.org; dmarc=none (p=none dis=none) header.from=SystematicSw.ab.ca Authentication-Results: sourceware.org; spf=none smtp.mailfrom=systematicsw.ab.ca Received: from shw-obgw-4003a.ext.cloudfilter.net ([10.228.9.183]) by cmsmtp with ESMTP id bSKhop5naS8WrbbzuomFvY; Fri, 23 Sep 2022 06:17:14 +0000 Received: from [10.0.0.5] ([184.64.124.72]) by cmsmtp with ESMTP id bbzuoQz6Rg786bbzuobI3Q; Fri, 23 Sep 2022 06:17:14 +0000 X-Authority-Analysis: v=2.4 cv=a94jSGeF c=1 sm=1 tr=0 ts=632d4f6a a=oHm12aVswOWz6TMtn9zYKg==:117 a=oHm12aVswOWz6TMtn9zYKg==:17 a=IkcTkHD0fZMA:10 a=w_pzkKWiAAAA:8 a=qILi8a18AAAA:8 a=_XjB_pHrAAAA:8 a=l8xkssyJAAAA:8 a=RlaJjdqZx8-K2-yauxUA:9 a=QEXdDO2ut3YA:10 a=daI9ojH3vpgA:10 a=sRI3_1zDfAgwuvI8zelB:22 a=afyxE7Onvs3FChIU605n:22 a=s5dVsxdzhPJ1D9j6SA8O:22 a=UWeKsGKsP_vgW3p10h_J:22 Message-ID: Date: Fri, 23 Sep 2022 00:17:13 -0600 MIME-Version: 1.0 User-Agent: Mozilla/5.0 (Windows NT 10.0; Win64; x64; rv:91.0) Gecko/20100101 Thunderbird/91.13.0 To: cygwin@cygwin.com References: Subject: Re: Unable to use JPEG on imageJ Reply-To: cygwin@cygwin.com Content-Language: en-CA Cc: rsbrodma@syr.edu From: Brian Inglis Organization: Systematic Software In-Reply-To: Content-Type: text/plain; charset=UTF-8; format=flowed Content-Transfer-Encoding: 7bit X-CMAE-Envelope: MS4xfNrOxiKuUeQesILXaAE/ERI61ojf1ipNuODcr2Oi3nSDoY6pHzg05ql9DhGzsIVdoEp0ZqW0YaQSjpyrZeRI1FERlgYkpAugDam8+yZ7NQi/Vb5eNqvt sk6wLHQtdonnIy/x5cB7WV7SO4iiTJdUBCEhA/oR7nVGYyJ0MqhRHlQ11tGoRZ+qPMhKB4COvfueBtRY64Je2HfudNWE8yKL6sw8lptmAIXl4kVa7TfxzvFh X-Spam-Status: No, score=-1163.8 required=5.0 tests=BAYES_00,KAM_DMARC_STATUS,KAM_LAZY_DOMAIN_SECURITY,NICE_REPLY_A,SPF_HELO_NONE,SPF_NONE,TXREP autolearn=no autolearn_force=no version=3.4.6 X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on server2.sourceware.org List-Id: On Thu, 22 Sep 2022 05:24:50 -0700, Rachel Samantha Brodman wrote: > I'm trying to generate a multispectral image using the MICA toolbox > plug-in, and I have been receiving an error message when trying to > use JPEG images. The error message reads "lookup thread terminated > with code 1". This public mailing list was provided so I wanted to > reach out. From previous complaints about this, the Cygwin fix is explained here: https://cygwin.com/faq.html#faq.using.fixing-find_fast_cwd-warnings which basically says you have really outdated software, as does: http://www.jolyon.co.uk/myresearch/image-analysis/image-analysis-tools/ which suggests you also need to upgrade Java, and maybe also MICA toolbox from: http://www.empiricalimaging.com/download/micatoolbox/ e.g. http://empiricalimaging.com/downloads/micaToolbox-2.2.2.zip as well as ImageJ and newer Java from: http://wsr.imagej.net/distros/win/ e.g. http://wsr.imagej.net/distros/win/ij153-win-java13-jre.zip as most of the other versions are years out of date, and older Java versions have serious security problems, as well as older Cygwin and Java have issues running on recent Windows, so future support may have issues. If you are running on older systems, you may have to install older versions to run the apps. You may want to reach out on Jolyon's Empirical Imaging Forums in future as recommended for more relevant advice from the developers. -- Take care. Thanks, Brian Inglis, Calgary, Alberta, Canada