From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mail-ed1-x543.google.com (mail-ed1-x543.google.com [IPv6:2a00:1450:4864:20::543]) by sourceware.org (Postfix) with ESMTPS id 04DB43857C44 for ; Sat, 12 Sep 2020 06:51:52 +0000 (GMT) DMARC-Filter: OpenDMARC Filter v1.3.2 sourceware.org 04DB43857C44 Received: by mail-ed1-x543.google.com with SMTP id w1so12507912edr.3 for ; Fri, 11 Sep 2020 23:51:51 -0700 (PDT) X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:subject:to:references:from:message-id:date :user-agent:mime-version:in-reply-to:content-language :content-transfer-encoding; bh=gy6Twe2BCZzYoh/AsXJxTcVYW7G4B2UEmAvDiKscUEI=; b=t4W+l934iHgBPrJXiIgpDUdrzURzhEr0u6qxmqW2WXcmtQwXdi8lZjy64BCVV75BuQ tfNH3GVYfqcW3Omer8UiWHJE36LmszgDSMmOgUIrM1tD1i19oL7kvOBKK5od16V3Tqh/ uwH2rtF5xT15dEcakHIVaQjx6d1F/EvnVWbxalv/CrpakGHYs+UgPopDFSpqoMiJxOGl Jo8q+u5X3gfr2AsiVLg8uUVR2+A9YJF/jnOer5wVdlibXvgJrg8j4hwPPLu5G8KsAG6A CfTYv+sX6TptmxiuWLj1c1e2TRDA/h5YEBQsE/phD6b+e8VDIVYw3pZF6J+eIXkMMO4R Q4xw== X-Gm-Message-State: AOAM532Zx717Bu2XWd/B6nS7Z6bdY83+08/D7634n7D94Wa+O9pMc1SL b+rYCcpb3/6i00hr56eSRFjkTRRoMm0= X-Google-Smtp-Source: ABdhPJzly4/YLxeC+PyWz9kXn2ND2oiiM4kJr8kV337LI5L+fyNBjmbUDGW6n6Zh94AzfG1PmPM6Og== X-Received: by 2002:a05:6402:ca7:: with SMTP id cn7mr6570288edb.143.1599893510910; Fri, 11 Sep 2020 23:51:50 -0700 (PDT) Received: from ?IPv6:2003:cc:9f24:861a:f53b:cf38:2a13:4b6f? (p200300cc9f24861af53bcf382a134b6f.dip0.t-ipconnect.de. [2003:cc:9f24:861a:f53b:cf38:2a13:4b6f]) by smtp.gmail.com with ESMTPSA id w14sm2765200ejn.36.2020.09.11.23.51.50 for (version=TLS1_3 cipher=TLS_AES_128_GCM_SHA256 bits=128/128); Fri, 11 Sep 2020 23:51:50 -0700 (PDT) Subject: Re: Setting up a proper modelling environment in Cygwin To: cygwin@cygwin.com References: <90d505d5-11fc-418d-02e4-73dd423a92ce@gmail.com> <22263d73-bd15-3558-bdfe-7cc960db5f65@SystematicSw.ab.ca> From: Marco Atzeri Message-ID: Date: Sat, 12 Sep 2020 08:51:50 +0200 User-Agent: Mozilla/5.0 (Windows NT 10.0; WOW64; rv:68.0) Gecko/20100101 Thunderbird/68.12.0 MIME-Version: 1.0 In-Reply-To: <22263d73-bd15-3558-bdfe-7cc960db5f65@SystematicSw.ab.ca> Content-Type: text/plain; charset=utf-8; format=flowed Content-Language: it Content-Transfer-Encoding: 7bit X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00, DKIM_SIGNED, DKIM_VALID, DKIM_VALID_AU, DKIM_VALID_EF, FREEMAIL_FROM, NICE_REPLY_A, RCVD_IN_DNSWL_NONE, SPF_HELO_NONE, SPF_PASS, TXREP autolearn=ham autolearn_force=no version=3.4.2 X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on server2.sourceware.org X-BeenThere: cygwin@cygwin.com X-Mailman-Version: 2.1.29 Precedence: list List-Id: General Cygwin discussions and problem reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 12 Sep 2020 06:51:53 -0000 On 12.09.2020 07:39, Brian Inglis wrote: > On 2020-09-11 08:59, Marco Atzeri via Cygwin wrote: >> On 11.09.2020 04:37, Lawrence Bernardo via Cygwin wrote: >>> Dear Cygwin users and developers, >>> >>> I am trying to run some models based on the ROMS ocean modeling system. And >>> although I mainly run such models on Linux supercomputing systems, I >>> sometimes use Cygwin to make test runs. However, whenever I install Cygwin >>> on a new PC, I often find that my set up on an older PC I had been using >>> doesn't work properly. After looking deeper into the issues, it seems that >>> proper compilation requires that the same fortran compiler (gfortran in >>> this case) be used to compile the necessary components. >>> >>> And as far as I understand, these components would mainly be: > >>> - netcdf-fortran > >>> As the gfortran compiler version number used for these different components >>> is not indicated whenever I run cygwin setup-x86_64.exe, I am left to guess >>> which version numbers for each to select. Of course, another option would >>> be to accept the defaults for some components, and then compile my own >>> version of say, netcdf, but this attempt almost always fails, and I'm not >>> sure if this is due to conflicts with the already existing cygwin setup. >>> >>> Given the issues above, would anyone have any suggestions or >>> recommendations on how to best achieve the setup I would like to have? I >>> will greatly appreciate any help. > >> netcdf-fortran needs a rebuild >> >> $ zcat /usr/include/netcdf.mod | head -n 1 >> GFORTRAN module version '14' created from netcdf4.f90 > > Worse, setup.ini somehow now contains component package netcdf-fortran-debuginfo > but not netcdf-fortran itself! > of course they are called a bit differently libnetcdf-fortran-devel 4.5.2-1 libnetcdf-fortran_7 4.5.2-1