* netcdf 4.3.3-1.2: HDF5 library version mismatched error
@ 2016-02-17 8:37 Alexander Barth
2016-02-17 8:54 ` Marco Atzeri
0 siblings, 1 reply; 2+ messages in thread
From: Alexander Barth @ 2016-02-17 8:37 UTC (permalink / raw)
To: cygwin
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Hi,
When I run the command:
ncdump.exe -h test_hgroups.nc
with the example NetCDF4 file from
https://www.unidata.ucar.edu/software/netcdf/examples/test_hgroups.nc,
I get the following HDF5 error message below, in particular:
Headers are 1.8.15, library is 1.8.16
Is it possible to recompile netcdf with the current version of HDF5?
This also affects octave-netcdf and possibly all programs which use netcdf.
Thank you for your fine work to maintain cygwin over all these years!
Regards,
Alexander Barth
Warning! ***HDF5 library version mismatched error***
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application continues.
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.8.15, library is 1.8.16
SUMMARY OF THE HDF5 CONFIGURATION
=================================
General Information:
-------------------
HDF5 Version: 1.8.16
Configured on: Fri Nov 13 18:23:58 CET 2015
Configured by: marco@GE-MATZERI-EU
Configure mode: production
Host system: x86_64-unknown-cygwin
Uname information: CYGWIN_NT-6.1 GE-MATZERI-EU
2.3.0(0.291/5/3) 20
15-11-09 10:24 x86_64
Cygwin
Byte sex: little-endian
Libraries: shared
Installation point: /usr
Compiling Options:
------------------
Compilation Mode: production
C Compiler: /usr/bin/gcc
CFLAGS: -ggdb -O2 -pipe
-Wimplicit-function-declaration
-fdebug-prefix-map=/pub/devel/hdf5/hdf5-1.8.16-1.x86_64/build=/usr/src/debug/hd
f5-1.8.16-1
-fdebug-prefix-map=/pub/devel/hdf5/hdf5-1.8.16-1.x86_64/src/hdf5-1.8
.16=/usr/src/debug/hdf5-1.8.16-1
H5_CFLAGS:
AM_CFLAGS:
CPPFLAGS:
H5_CPPFLAGS: -DNDEBUG -UH5_DEBUG_API
AM_CPPFLAGS:
Shared C Library: yes
Static C Library: no
Statically Linked Executables: no
LDFLAGS:
H5_LDFLAGS: -no-undefined
AM_LDFLAGS:
Extra libraries: -lz -ldl -lm
Archiver: ar
Ranlib: ranlib
Debugged Packages:
API Tracing: no
Languages:
----------
Fortran: no
C++: yes
C++ Compiler: /usr/bin/g++
C++ Flags: -ggdb -O2 -pipe
-fdebug-prefix-map=/pub/devel/h
df5/hdf5-1.8.16-1.x86_64/build=/usr/src/debug/hdf5-1.8.16-1
-fdebug-prefix-map=/
pub/devel/hdf5/hdf5-1.8.16-1.x86_64/src/hdf5-1.8.16=/usr/src/debug/hdf5-1.8.16-1
H5 C++ Flags:
AM C++ Flags:
Shared C++ Library: yes
Static C++ Library: no
Features:
---------
Parallel HDF5: no
High Level library: yes
Threadsafety: no
Default API Mapping: v18
With Deprecated Public Symbols: yes
I/O filters (external): deflate(zlib)
MPE: no
Direct VFD: no
dmalloc: no
Clear file buffers before write: yes
Using memory checker: no
Function Stack Tracing: no
Strict File Format Checks: no
Optimization Instrumentation: no
Bye...
Aborted (core dumped)
[-- Attachment #2: cygcheck.out --]
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Cygwin Configuration Diagnostics
Current System Time: Wed Feb 17 08:27:05 2016
Windows 8.1 Home Ver 6.3 Build 9600
Path: C:\cygwin64\usr\local\bin
C:\cygwin64\bin
C:\Program Files (x86)\Intel\iCLS Client
C:\Program Files\Intel\iCLS Client
C:\WINDOWS\system32
C:\WINDOWS
C:\WINDOWS\System32\Wbem
C:\WINDOWS\System32\WindowsPowerShell\v1.0
C:\Program Files\Intel\Intel(R) Management Engine Components\DAL
C:\Program Files\Intel\Intel(R) Management Engine Components\IPT
C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL
C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT
C:\Program Files (x86)\Security Innovation\SI TSS\bin
C:\Program Files (x86)\Windows Live\Shared
C:\Program Files\Intel\WiFi\bin
C:\Program Files\Common Files\Intel\WirelessCommon
C:\Program Files\TortoiseSVN\bin
C:\Program Files (x86)\QuickTime\QTSystem
C:\cygwin64\lib\lapack
Output from C:\cygwin64\bin\id.exe
UID: 197609(Alexander Barth) GID: 197121(Aucun)
=197121(Aucun) 545(Utilisateurs)
4(INTERACTIF) 66049(OUVERTURE DE SESSION DE CONSOLE)
11(Utilisateurs authentifiés) 15(Cette organisation)
113(Compte local) 4095(CurrentSession)
66048(LOCAL) 262154(Authentifications NTLM)
401408(Niveau obligatoire moyen)
SysDir: C:\WINDOWS\system32
WinDir: C:\WINDOWS
USER = 'Alexander Barth'
PWD = '/cygdrive/c/Users/Alexander Barth/Downloads'
HOME = '/home/Alexander Barth'
USERDOMAIN_ROAMINGPROFILE = 'alex-laptop'
HOMEPATH = '\Users\Alexander Barth'
APPDATA = 'C:\Users\Alexander Barth\AppData\Roaming'
ProgramW6432 = 'C:\Program Files'
HOSTNAME = 'alex-laptop'
SHELL = '/bin/bash'
TERM = 'xterm'
PROCESSOR_IDENTIFIER = 'Intel64 Family 6 Model 58 Stepping 9, GenuineIntel'
PROFILEREAD = 'true'
WINDIR = 'C:\WINDOWS'
PUBLIC = 'C:\Users\Public'
OLDPWD = '/cygdrive/c/Users/Alexander Barth'
ORIGINAL_PATH = '/cygdrive/c/Program Files (x86)/Intel/iCLS Client:/cygdrive/c/Program Files/Intel/iCLS Client:/cygdrive/c/WINDOWS/system32:/cygdrive/c/WINDOWS:/cygdrive/c/WINDOWS/System32/Wbem:/cygdrive/c/WINDOWS/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/DAL:/cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/IPT:/cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL:/cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/IPT:/cygdrive/c/Program Files (x86)/Security Innovation/SI TSS/bin:/cygdrive/c/Program Files (x86)/Windows Live/Shared:/cygdrive/c/Program Files/Intel/WiFi/bin:/cygdrive/c/Program Files/Common Files/Intel/WirelessCommon:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files (x86)/QuickTime/QTSystem'
USERDOMAIN = 'alex-laptop'
CommonProgramFiles(x86) = 'C:\Program Files (x86)\Common Files'
OS = 'Windows_NT'
ALLUSERSPROFILE = 'C:\ProgramData'
!:: = '::\'
TEMP = '/tmp'
COMMONPROGRAMFILES = 'C:\Program Files\Common Files'
USERNAME = 'Alexander Barth'
PROCESSOR_LEVEL = '6'
ProgramFiles(x86) = 'C:\Program Files (x86)'
PSModulePath = 'C:\WINDOWS\system32\WindowsPowerShell\v1.0\Modules\'
FP_NO_HOST_CHECK = 'NO'
SYSTEMDRIVE = 'C:'
LANG = 'fr_FR.UTF-8'
USERPROFILE = 'C:\Users\Alexander Barth'
TZ = 'Europe/Brussels'
PS1 = '\[\e]0;\w\a\]\n\[\e[32m\]\u@\h \[\e[33m\]\w\[\e[0m\]\n\$ '
LOGONSERVER = '\\ALEX-LAPTOP'
CommonProgramW6432 = 'C:\Program Files\Common Files'
PROCESSOR_ARCHITECTURE = 'AMD64'
LOCALAPPDATA = 'C:\Users\Alexander Barth\AppData\Local'
ProgramData = 'C:\ProgramData'
EXECIGNORE = '*.dll'
SHLVL = '1'
PATHEXT = '.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC'
HOMEDRIVE = 'C:'
COMSPEC = 'C:\WINDOWS\system32\cmd.exe'
TMP = '/tmp'
SYSTEMROOT = 'C:\WINDOWS'
PRINTER = 'Send To OneNote 2013'
PROCESSOR_REVISION = '3a09'
INFOPATH = '/usr/local/info:/usr/share/info:/usr/info'
PROGRAMFILES = 'C:\Program Files'
NUMBER_OF_PROCESSORS = '4'
SESSIONNAME = 'Console'
COMPUTERNAME = 'ALEX-LAPTOP'
_ = '/usr/bin/cygcheck'
HKEY_CURRENT_USER\Software\Cygwin
HKEY_CURRENT_USER\Software\Cygwin\Installations
(default) = '\??\C:\cygwin64'
HKEY_LOCAL_MACHINE\SOFTWARE\Classes\XLaunch.cygwin
HKEY_LOCAL_MACHINE\SOFTWARE\Classes\XLaunch.cygwin\DefaultIcon
(default) = 'C:\cygwin64\bin\xlaunch.exe,1'
HKEY_LOCAL_MACHINE\SOFTWARE\Classes\XLaunch.cygwin\Shell
HKEY_LOCAL_MACHINE\SOFTWARE\Classes\XLaunch.cygwin\Shell\Edit
HKEY_LOCAL_MACHINE\SOFTWARE\Classes\XLaunch.cygwin\Shell\Edit\command
(default) = '"C:\cygwin64\bin\run" --quote "C:\cygwin64\bin\bash" -l -c "xlaunch -load \"$(cygpath '%1')\""'
HKEY_LOCAL_MACHINE\SOFTWARE\Classes\XLaunch.cygwin\Shell\Open
HKEY_LOCAL_MACHINE\SOFTWARE\Classes\XLaunch.cygwin\Shell\Open\command
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HKEY_LOCAL_MACHINE\SOFTWARE\Cygwin
HKEY_LOCAL_MACHINE\SOFTWARE\Cygwin\Installations
(default) = '\??\C:\cygwin64'
HKEY_LOCAL_MACHINE\SOFTWARE\Cygwin\setup
(default) = 'C:\cygwin64'
obcaseinsensitive set to 1
Cygwin installations found in the registry:
System: Key: e022582115c10879 Path: C:\cygwin64
User: Key: e022582115c10879 Path: C:\cygwin64
c: hd NTFS 102049Mb 73% CP CS UN PA FC OS
d: cd N/A N/A
e: hd N/A N/A
f: hd N/A N/A
C:\cygwin64 / system binary,auto
C:\cygwin64\bin /usr/bin system binary,auto
C:\cygwin64\lib /usr/lib system binary,auto
cygdrive prefix /cygdrive user binary,posix=0,auto
Found: C:\cygwin64\bin\awk
-> C:\cygwin64\bin\gawk.exe
Found: C:\cygwin64\bin\bash.exe
Found: C:\cygwin64\bin\cat.exe
Found: C:\cygwin64\bin\cp.exe
Not Found: cpp (good!)
Not Found: crontab
Found: C:\cygwin64\bin\find.exe
Found: C:\WINDOWS\system32\find.exe
Warning: C:\cygwin64\bin\find.exe hides C:\WINDOWS\system32\find.exe
Not Found: gcc
Not Found: gdb
Found: C:\cygwin64\bin\grep.exe
Found: C:\cygwin64\bin\kill.exe
Not Found: ld
Found: C:\cygwin64\bin\ls.exe
Not Found: make
Found: C:\cygwin64\bin\mv.exe
Not Found: patch
Found: C:\cygwin64\bin\perl.exe
Found: C:\cygwin64\bin\rm.exe
Found: C:\cygwin64\bin\sed.exe
Found: C:\cygwin64\bin\ssh.exe
Found: C:\cygwin64\bin\sh.exe
Found: C:\cygwin64\bin\tar.exe
Found: C:\cygwin64\bin\test.exe
Found: C:\cygwin64\bin\vi.exe
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11k 2013/03/18 C:\cygwin64\bin\cygXcomposite-1.dll - os=4.0 img=0.0 sys=5.2
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34k 2013/06/06 C:\cygwin64\bin\cygXcursor-1.dll - os=4.0 img=0.0 sys=5.2
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10k 2013/04/08 C:\cygwin64\bin\cygXdamage-1.dll - os=4.0 img=0.0 sys=5.2
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21k 2015/03/26 C:\cygwin64\bin\cygXdmcp-6.dll - os=4.0 img=0.0 sys=5.2
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56k 2014/08/10 C:\cygwin64\bin\cygXext-6.dll - os=4.0 img=0.0 sys=5.2
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19k 2013/06/06 C:\cygwin64\bin\cygXfixes-3.dll - os=4.0 img=0.0 sys=5.2
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209k 2015/03/17 C:\cygwin64\bin\cygXfont-1.dll - os=4.0 img=0.0 sys=5.2
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73k 2014/08/10 C:\cygwin64\bin\cygXft-2.dll - os=4.0 img=0.0 sys=5.2
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57k 2016/01/29 C:\cygwin64\bin\cygXi-6.dll - os=4.0 img=0.0 sys=5.2
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10k 2013/06/06 C:\cygwin64\bin\cygXinerama-1.dll - os=4.0 img=0.0 sys=5.2
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128k 2016/01/29 C:\cygwin64\bin\cygxkbfile-1.dll - os=4.0 img=0.0 sys=5.2
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1206k 2015/11/27 C:\cygwin64\bin\cygxml2-2.dll - os=4.0 img=0.0 sys=5.2
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85k 2014/01/15 C:\cygwin64\bin\cygXmu-6.dll - os=4.0 img=0.0 sys=5.2
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59k 2014/01/15 C:\cygwin64\bin\cygXpm-4.dll - os=4.0 img=0.0 sys=5.2
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36k 2016/01/29 C:\cygwin64\bin\cygXrandr-2.dll - os=4.0 img=0.0 sys=5.2
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36k 2016/01/29 C:\cygwin64\bin\cygXrender-1.dll - os=4.0 img=0.0 sys=5.2
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326k 2016/01/29 C:\cygwin64\bin\cygXt-6.dll - os=4.0 img=0.0 sys=5.2
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80k 2014/11/19 C:\cygwin64\bin\cygz.dll - os=4.0 img=0.0 sys=5.2
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3327k 2016/01/24 C:\cygwin64\bin\cygwin1.dll - os=4.0 img=0.0 sys=5.2
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Cygwin DLL version info:
DLL version: 2.4.1
DLL epoch: 19
DLL old termios: 5
DLL malloc env: 28
Cygwin conv: 181
API major: 0
API minor: 293
Shared data: 5
DLL identifier: cygwin1
Mount registry: 3
Cygwin registry name: Cygwin
Installations name: Installations
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Build date:
Shared id: cygwin1S5
449k 2015/11/01 C:\cygwin64\lib\lapack\cygblas-0.dll - os=4.0 img=0.0 sys=5.2
"cygblas-0.dll" v0.0 ts=2015-11-01 05:53
5885k 2015/11/01 C:\cygwin64\lib\lapack\cyglapack-0.dll - os=4.0 img=0.0 sys=5.2
"cyglapack-0.dll" v0.0 ts=2015-11-01 05:53
No Cygwin services found.
Cygwin Package Information
Last downloaded files to: C:\Users\Alexander Barth\Downloads
Last downloaded files from: http://cygwin.mirror.constant.com/
Package Version Status
_autorebase 001003-1 OK
adwaita-icon-theme 3.18.0-1 OK
adwaita-themes 3.18.0-1 OK
alternatives 1.3.30c-10 OK
base-cygwin 3.8-1 OK
base-files 4.2-4 OK
bash 4.3.42-4 OK
bzip2 1.0.6-2 OK
ca-certificates 2.6-1 OK
coreutils 8.24-3 OK
csih 0.9.9-1 OK
cygrunsrv 1.62-1 OK
cygutils 1.4.15-2 OK
cygwin 2.4.1-1 OK
dash 0.5.8-3 OK
dbus 1.8.16-1 OK
dbus-x11 1.8.16-1 OK
desktop-file-utils 0.22-1 OK
diffutils 3.3-3 OK
dri-drivers 11.0.9-1 OK
editrights 1.03-1 OK
file 5.25-1 OK
findutils 4.5.12-1 OK
Empty package font-adobe-dpi75
font-adobe-dpi75 7.5-2 OK
Empty package font-alias
font-alias 7.5-2 OK
Empty package font-misc-misc
font-misc-misc 7.5-2 OK
gamin 0.1.10-15 OK
gawk 4.1.3-1 OK
gdk-pixbuf2.0-svg 2.40.11-1 OK
getent 2.18.90-4 OK
ghostscript 9.15-2 OK
ghostscript-fonts-other 6.0-1 OK
ghostscript-fonts-std 8.11-1 OK
gnome-menus 3.13.3-3 OK
grep 2.21-2 OK
groff 1.22.3-1 OK
gsettings-desktop-schemas 3.18.1-1 OK
gtk-update-icon-cache 3.18.7-1 OK
gtk2.0-engines-pixmap 2.24.29-1 OK
gzip 1.6-1 OK
hicolor-icon-theme 0.12-1 OK
hostname 3.13-1 OK
info 6.1-1 OK
ipc-utils 1.0-2 OK
keychain 2.7.1-1 OK
less 481-1 OK
libamd1 2.4.1-1 OK
libargp 20110921-2 OK
libarpack0 3.3.0-2 OK
libatk1.0_0 2.18.0-1 OK
libattr1 2.4.46-1 OK
libaudio2 1.9.3-1 OK
libblkid1 2.25.2-2 OK
libbz2_1 1.0.6-2 OK
libcairo2 1.14.4-1 OK
libcamd1 2.4.1-1 OK
libccolamd1 2.9.1-1 OK
libcholmod1 3.0.6-1 OK
libcolamd1 2.9.1-1 OK
libcom_err2 1.42.12-2 OK
libcroco0.6_3 0.6.9-1 OK
libcrypt0 1.1-1 OK
libcurl4 7.47.0-2 OK
libcxsparse0 3.1.4-1 OK
libdatrie1 0.2.8-1 OK
libdb5.3 5.3.21-1 OK
libdbus1_3 1.8.16-1 OK
libedit0 20130712-1 OK
libEGL1 11.0.9-1 OK
libexpat1 2.1.0-3 OK
libfam0 0.1.10-15 OK
libffi6 3.2.1-2 OK
libfftw3_3 3.3.4-2 OK
libFLAC8 1.3.1-1 OK
libfltk1.3 1.3.3-1 OK
libfontconfig1 2.11.1-3 OK
libfontenc1 1.1.3-1 OK
libfreetype6 2.5.5-2 OK
libgcc1 4.9.3-1 OK
libgdbm4 1.11-1 OK
libgdk_pixbuf2.0_0 2.32.2-1 OK
libgfortran3 4.9.3-1 OK
libGL1 11.0.9-1 OK
libgl2ps1 1.3.9-1 OK
libglapi0 11.0.9-1 OK
libglib2.0_0 2.46.2-2 OK
libglpk36 4.57-1 OK
libGLU1 9.0.0-1 OK
libgmp10 6.1.0-3p1 OK
libgnome-menu3_0 3.13.3-3 OK
libgnutls28 3.3.17-1 OK
libGraphicsMagick++12 1.3.23-1 OK
libGraphicsMagick3 1.3.23-1 OK
libgraphite2_3 1.2.3-1 OK
libgs9 9.15-2 OK
libgsm1 1.0.13-3 OK
libgssapi_krb5_2 1.13.2-4 OK
libgtk2.0_0 2.24.29-1 OK
libharfbuzz0 1.0.6-1 OK
libhdf5_10 1.8.16-1 OK
libhogweed2 2.7-2 OK
libICE6 1.0.9-1 OK
libiconv 1.14-3 OK
libiconv2 1.14-3 OK
libidn11 1.29-1 OK
libintl8 0.19.5.1-2 OK
libjasper1 1.900.1-15 OK
libjbig2 2.0-14 OK
libjpeg8 1.4.2-1 OK
libk5crypto3 1.13.2-4 OK
libkrb5_3 1.13.2-4 OK
libkrb5support0 1.13.2-4 OK
liblapack0 3.5.0r1606-3 OK
liblcms1 1.19-5 OK
liblcms2_2 2.6-1 OK
libllvm3.5 3.5.2-1 OK
liblzma5 5.2.2-1 OK
liblzo2_2 2.08-1 OK
libmcpp0 2.7.2-2 OK
libmetis0 5.1.0-1 OK
libmng1 1.0.10-1 OK
libmpfr4 3.1.3-1 OK
libncursesw10 6.0-2.20160123 OK
libnetcdf7 4.3.3.1-2 OK
libnettle4 2.7-2 OK
libnghttp2_14 1.6.0-1 OK
libogg0 1.3.1-1 OK
libopenblas 0.2.15-3 OK
libopenldap2_4_2 2.4.42-1 OK
libopenssl100 1.0.2f-1 OK
libOSMesa8 11.0.9-1 OK
libp11-kit0 0.22.1-1 OK
libpango1.0_0 1.38.1-1 OK
libpaper-common 1.1.24-2 OK
libpaper1 1.1.24-2 OK
libpcre1 8.38-1 OK
libpipeline1 1.4.0-1 OK
libpixman1_0 0.32.8-1 OK
libpng16 1.6.20-1 OK
Empty package libpopt0
libpopt0 1.16-1 OK
libqhull_6 2012.1-2 OK
libqrupdate0 1.1.2-2 OK
libqscintilla2-common 2.9-1 OK
libqscintilla2_12 2.9-1 OK
libQtCore4 4.8.7-1 OK
libQtGui4 4.8.7-1 OK
libQtNetwork4 4.8.7-1 OK
libQtOpenGL4 4.8.7-1 OK
libquadmath0 4.9.3-1 OK
libreadline7 6.3.8-1 OK
librsvg2_2 2.40.11-1 OK
libsasl2_3 2.1.26-9 OK
libsigsegv2 2.10-2 OK
libSM6 1.2.2-1 OK
libsmartcols1 2.25.2-2 OK
libsndfile1 1.0.25-4 OK
libssh2_1 1.5.0-1 OK
libssp0 4.9.3-1 OK
libstdc++6 4.9.3-1 OK
libsuitesparseconfig1 4.4.5-1 OK
libtasn1_6 4.7-1 OK
libthai0 0.1.21-1 OK
libtiff6 4.0.6-1 OK
libumfpack1 5.7.1-1 OK
libuuid1 2.25.2-2 OK
libvorbis 1.3.5-1 OK
libvorbis0 1.3.5-1 OK
libvorbisenc2 1.3.5-1 OK
libwebp5 0.4.3-1 OK
libwmf027 0.2.8.4-15 OK
libX11-xcb1 1.6.3-1 OK
libX11_6 1.6.3-1 OK
libXau6 1.0.8-1 OK
libXaw7 1.0.13-1 OK
libxcb-composite0 1.11.1-1 OK
libxcb-ewmh2 0.4.1-1 OK
libxcb-glx0 1.11.1-1 OK
libxcb-icccm4 0.4.1-1 OK
libxcb-image0 0.3.9-1 OK
libxcb-render0 1.11.1-1 OK
libxcb-shm0 1.11.1-1 OK
libxcb-util1 0.3.9-1 OK
libxcb1 1.11.1-1 OK
libXcomposite1 0.4.3-1 OK
libXcursor1 1.1.14-1 OK
libXdamage1 1.1.4-1 OK
libXdmcp6 1.1.2-1 OK
libXext6 1.3.3-1 OK
libXfixes3 5.0.1-1 OK
libXfont1 1.5.1-1 OK
libXft2 2.3.2-1 OK
libXi6 1.7.6-1 OK
libXinerama1 1.1.3-1 OK
libxkbfile1 1.0.9-1 OK
libxml2 2.9.3-1 OK
libXmu6 1.1.2-1 OK
libXmuu1 1.1.2-1 OK
libXpm4 3.5.11-1 OK
libXrandr2 1.5.0-1 OK
libXrender1 0.9.9-1 OK
libXt6 1.1.5-1 OK
login 1.11-1 OK
luit 20130217-1 OK
lynx 2.8.7-2 OK
man-db 2.7.4-1 OK
mcpp 2.7.2-2 OK
mintty 2.2.3-0 OK
ncurses 6.0-2.20160123 OK
netcdf 4.3.3.1-1 OK
octave 4.0.0-3 OK
octave-netcdf 1.0.7-1 OK
openssh 7.1p2-1 OK
openssl 1.0.2f-1 OK
p11-kit 0.22.1-1 OK
p11-kit-trust 0.22.1-1 OK
perl 5.22.1-1 OK
perl_autorebase 5.22.1-1 OK
perl_base 5.22.1-1 OK
popt 1.16-1 OK
rebase 4.4.1-1 OK
run 1.3.4-2 OK
sed 4.2.2-3 OK
setxkbmap 1.3.1-1 OK
shared-mime-info 1.5-1 OK
tar 1.28-1 OK
terminfo 6.0-2.20160123 OK
tzcode 2016a-1 OK
util-linux 2.25.2-2 OK
vim-minimal 7.4.1278-1 OK
wget 1.17.1-1 OK
which 2.20-2 OK
xauth 1.0.9-1 OK
xcursor-themes 1.0.4-1 OK
xdg-user-dirs 0.15-1 OK
xf86-video-dummy 0.3.7-4 OK
xf86-video-nested 0.1.0-7 OK
xinit 1.3.4-9 OK
xkbcomp 1.3.1-1 OK
xkeyboard-config 2.17-1 OK
xlaunch 20150224-2 OK
xmodmap 1.0.9-1 OK
xorg-server 1.18.0-2 OK
xorg-server-common 1.18.0-2 OK
xorg-x11-fonts-dpi75 7.5-2 OK
xorg-x11-fonts-misc 7.5-2 OK
xrdb 1.1.0-1 OK
xterm 320-1 OK
xwin-xdg-menu 20150708-1 OK
xz 5.2.2-1 OK
zlib0 1.2.8-3 OK
Use -h to see help about each section
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^ permalink raw reply [flat|nested] 2+ messages in thread
* Re: netcdf 4.3.3-1.2: HDF5 library version mismatched error
2016-02-17 8:37 netcdf 4.3.3-1.2: HDF5 library version mismatched error Alexander Barth
@ 2016-02-17 8:54 ` Marco Atzeri
0 siblings, 0 replies; 2+ messages in thread
From: Marco Atzeri @ 2016-02-17 8:54 UTC (permalink / raw)
To: cygwin
On 17/02/2016 09:37, Alexander Barth wrote:
> Hi,
>
> When I run the command:
>
> ncdump.exe -h test_hgroups.nc
>
> with the example NetCDF4 file from
> https://www.unidata.ucar.edu/software/netcdf/examples/test_hgroups.nc,
> I get the following HDF5 error message below, in particular:
> Headers are 1.8.15, library is 1.8.16
>
> Is it possible to recompile netcdf with the current version of HDF5?
>
> This also affects octave-netcdf and possibly all programs which use netcdf.
>
> Thank you for your fine work to maintain cygwin over all these years!
>
> Regards,
> Alexander Barth
>
Noted.
Unfortunately hdf5 is very poor in maintaining compatibility.
In theory 1.8.15 and 1.8.16 should be API compatible...
I was planning to wait octave 4.0.1 before bumping netcdf to 4.4.0.
But I will prepare netcdf-4.4.0 and netcdf-fortran-4.4.3 and bump
netcdf-cxx4-4.2.1 just to be sure.
Regards
Marco
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2016-02-17 8:37 netcdf 4.3.3-1.2: HDF5 library version mismatched error Alexander Barth
2016-02-17 8:54 ` Marco Atzeri
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