Re: stampy error running Make after installing update 2.4.1.1 to Cygwin64

Re: stampy error running Make after installing update 2.4.1.1 to Cygwin64

[Robert May]

I still can.t make sense of it
below is the contents of makefile

the end of running make is still the same
$ make
makefile:1: *** missing separator.  Stop.


maybe someone can make sense of the below

Bob


m#

# - the linux x86-64 platform is supported, with Python 2.7.  Both 

#   2- and 4-byte 4-byte Unicode representations (UCS2 and UCS4) are supported.

#   


SHELL=/bin/bash

python?=python


#############################
# User targets
#############################

all:

    @$(MAKE) ucs=`$(python) -c "import sys;print sys.maxunicode> 65536 and 'ucs4' or 'ucs2'"` platform=`$(python) -c "import sys;print {'linux2':'linux-x86_64','darwin':'macosx-10.6-universal'}.get(sys.platform,'unknown')"` build-stampy

clean:
    -rm maptools.so
    -rm build/*/*.pyc

#############################
# End of user targets
#############################

build-stampy:
    @if [[ `$(python) --version 2>&1 |awk -F "." '{print $$2}'` -eq 7 ]]; then \
      $(MAKE) bdir=build/$(platform)-2.7-$(ucs) python=python2.7 platform=$(platform) buildall ; \
    else \
      echo Python version 2.7 is required; \
    fi
## remove \ from 25, 26, 27 & 28   not thots not it put them back
objs=$(bdir)/pyx/maptools.o $(bdir)/c/maputils.o $(bdir)/c/alignutils.o $(bdir)/readalign.o $(bdir)/algebras.o $(bdir)/frontend.o

$(bdir)/%.o:
    gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -fPIC `$(python)-config --includes` -c ext/readalign/$*.cc -o $@

buildall: $(bdir)/readalign.o $(bdir)/frontend.o $(bdir)/algebras.o
    cp -r build/$(python)/*  .        
ifeq ($(platform),linux-x86_64)            
    g++ `$(python)-config --ldflags` -pthread -shared $(objs) -o maptools.so           
else             
    g++ `$(python)-config --ldflags` -pthread -dynamiclib $(objs) -o maptools.so        
endif

 Bob May
DNA Projects I2b L415, I2c L596 HG, Spriggs of Cleve SA Family & Tyler Surname and ISOGG YTree 		 	   		  
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Re: stampy error running Make after installing update 2.4.1.1 to Cygwin64

[Michael Enright]

On Tue, Jan 26, 2016 at 11:10 PM, Robert May  wrote:
>
> I still can.t make sense of it
> below is the contents of makefile
>
> the end of running make is still the same
> $ make
> makefile:1: *** missing separator.  Stop.
>

I didn't get that line but I got several others. I extracted a
makefile from the email starting from AFTER the 'm' and ending at the
endif that occurs in the buildall target.

Each line that I got an error from was a line that was indented with
spaces (perhaps due to email) and when I changed that to a tab or two
the 'next error to fix' changed to something else. It ended at "No
rule to make target build-stampy" but I don't have any of the files so
that's probably the end of my assistance.

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Re: stampy error running Make after installing update 2.4.1.1 to Cygwin64

[cyg Simple]

On 1/25/2016 4:09 PM, Robert May wrote:
> obert@DESKTOP-14EL82S /cygdrive/c/cygwin64/usr/local/bin/stampy-1.0.28
> $ make
> makefile:1: *** missing separator.  Stop.
> 

You have something wrong with the Makefile.  I'm suspecting that it is
probably the wrong line ending characters; i.e. you have CRLF and not
just LF.

-- 
cyg Simple

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stampy error running Make after installing update 2.4.1.1 to Cygwin64

[Robert May]

obert@DESKTOP-14EL82S /cygdrive/c/cygwin64/usr/local/bin/stampy-1.0.28
$ make
makefile:1: *** missing separator.  Stop.

 Bob May
DNA Projects I2b L415, I2c L596 HG, Spriggs of Cleve SA Family & Tyler Surname and ISOGG YTree 		 	   		  
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